Mouse visual cortex single-cell RNA-seq data, 65,539 cells, 9 main cell types, visualised in UMAP 3D.
Paper: Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex
URL: https://www.nature.com/articles/s41593-017-0029-5
6,962 bronchoalveolar lavage fluid immune cells from patients with varying severity of COVID-19
and from healthy people, trajectory path inferred by PAGA.
Paper: Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19
URL: https://www.nature.com/articles/s41591-020-0901-9
Two Visium spatial transcriptomics dataset of the mouse brain (Sagittal), including anterior (2,695) and posterior (3,355). The data sets are integrated by Scanorama.
URL: publicly available from the 10x genomics website.
Single-cell transcriptomes across four key Hamburger-Hamilton ventricular development stages (HH21-HH24, HH30-HH31, HH35-HH36, and HH40), 24,356 cells in total, cell types inferred by single cell reference using Seurat anchors.
Paper: Spatiotemporal single-cell RNA sequencing of developing chicken hearts identifies interplay between cellular differentiation and morphogenesis
URL: http://www.nature.com/articles/s41467-021-21892-z